J5_4V7I_006
3D structure
- PDB id
- 4V7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome-SecY complex.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V7I|1|A8|U|2076, 4V7I|1|A8|G|2428, 4V7I|1|A8|G|2429, 4V7I|1|A8|A|2430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V7I_006 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.2353
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7I|1|A8|U|2074
4V7I|1|A8|U|2075
4V7I|1|A8|U|2076
4V7I|1|A8|A|2077
*
4V7I|1|A8|U|2243
4V7I|1|A8|U|2244
4V7I|1|A8|U|2245
4V7I|1|A8|G|2246
*
4V7I|1|A8|C|2258
4V7I|1|A8|U|2259
*
4V7I|1|A8|A|2281
4V7I|1|A8|G|2282
*
4V7I|1|A8|C|2427
4V7I|1|A8|G|2428
4V7I|1|A8|G|2429
4V7I|1|A8|A|2430
4V7I|1|A8|U|2431
4V7I|1|A8|A|2432
4V7I|1|A8|A|2433
4V7I|1|A8|A|2434
4V7I|1|A8|A|2435
Current chains
- Chain A8
- 23S ribosomal RNA
Nearby chains
- Chain A1
- 50S ribosomal protein L33
- Chain A3
- 50S ribosomal protein L35
- Chain A6
- 50S ribosomal protein L2
- Chain AL
- 50S ribosomal protein L15
- Chain AW
- 50S ribosomal protein L27
- Chain AX
- 50S ribosomal protein L28
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