J5_4V7K_001

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V7K|1|AA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7K_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0648

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V7K|1|AA|C|47
4V7K|1|AA|G|48
4V7K|1|AA|A|49
4V7K|1|AA|U|50
4V7K|1|AA|G|51
4V7K|1|AA|A|52
4V7K|1|AA|A|53
4V7K|1|AA|G|54
*
4V7K|1|AA|C|116
4V7K|1|AA|G|117
4V7K|1|AA|A|118
4V7K|1|AA|A|119
4V7K|1|AA|U|120
4V7K|1|AA|G|121
*
4V7K|1|AA|C|130
4V7K|1|AA|G|131
*
4V7K|1|AA|C|148
4V7K|1|AA|A|149
4V7K|1|AA|C|150
*
4V7K|1|AA|G|176
4V7K|1|AA|G|177
4V7K|1|AA|G|178

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A7

50S ribosomal protein L34