J5_4V7R_010

3D structure

PDB id

4V7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V7R|1|C1|A|93, 4V7R|1|C1|C|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7R_010 not in the Motif Atlas

Homologous match to J5_8C3A_020

Geometric discrepancy: 0.1486

The information below is about J5_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7R|1|C1|C|54
4V7R|1|C1|A|55
4V7R|1|C1|U|56
4V7R|1|C1|G|57
*
4V7R|1|C1|C|90
4V7R|1|C1|G|91
4V7R|1|C1|A|92
4V7R|1|C1|A|93
4V7R|1|C1|U|94
4V7R|1|C1|G|95
4V7R|1|C1|G|96
4V7R|1|C1|C|97
*
4V7R|1|C1|G|386
4V7R|1|C1|A|387
4V7R|1|C1|G|388
*
4V7R|1|C1|C|409
4V7R|1|C1|A|410
4V7R|1|C1|C|411
*
4V7R|1|C1|G|422
4V7R|1|C1|G|423
4V7R|1|C1|C|424
4V7R|1|C1|A|425
4V7R|1|C1|G|426

Current chains

Chain C1

18S ribosomal RNA

Nearby chains

Chain DU

60S ribosomal protein L23