J5_4V7X_020

3D structure

PDB id

4V7X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus ribosome complexed with erythromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V7X|1|CA|A|109, 4V7X|1|CA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7X_020 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0809

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V7X|1|CA|C|58
4V7X|1|CA|A|59
4V7X|1|CA|A|60
4V7X|1|CA|G|61
*
4V7X|1|CA|C|106
4V7X|1|CA|G|107
4V7X|1|CA|G|108
4V7X|1|CA|A|109
4V7X|1|CA|C|110
4V7X|1|CA|G|111
4V7X|1|CA|G|112
4V7X|1|CA|G|113
*
4V7X|1|CA|C|314
4V7X|1|CA|A|315
4V7X|1|CA|G|316
*
4V7X|1|CA|C|337
4V7X|1|CA|A|338
4V7X|1|CA|C|339
*
4V7X|1|CA|G|350
4V7X|1|CA|G|351
4V7X|1|CA|C|352
4V7X|1|CA|A|353
4V7X|1|CA|G|354

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CT

30S ribosomal protein S20

Chain DO

50S ribosomal protein L14