J5_4V84_003

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V84|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V84_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0576

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V84|1|BA|C|47
4V84|1|BA|G|48
4V84|1|BA|A|49
4V84|1|BA|U|50
4V84|1|BA|G|51
4V84|1|BA|A|52
4V84|1|BA|A|53
4V84|1|BA|G|54
*
4V84|1|BA|C|116
4V84|1|BA|G|117
4V84|1|BA|A|118
4V84|1|BA|A|119
4V84|1|BA|U|120
4V84|1|BA|G|121
*
4V84|1|BA|C|130
4V84|1|BA|G|131
*
4V84|1|BA|C|148
4V84|1|BA|A|149
4V84|1|BA|C|150
*
4V84|1|BA|G|176
4V84|1|BA|G|177
4V84|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23