J5_4V87_004
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V87|1|AA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V87_004 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0706
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V87|1|AA|C|584
4V87|1|AA|G|585
4V87|1|AA|A|586
4V87|1|AA|C|587
4V87|1|AA|U|588
4V87|1|AA|C|589
*
4V87|1|AA|G|668
4V87|1|AA|G|669
4V87|1|AA|A|670
4V87|1|AA|C|671
*
4V87|1|AA|G|809
4V87|1|AA|U|810
4V87|1|AA|U|811
4V87|1|AA|C|812
*
4V87|1|AA|G|1195
4V87|1|AA|C|1196
*
4V87|1|AA|G|1250
4V87|1|AA|C|1251
4V87|1|AA|G|1252
4V87|1|AA|A|1253
4V87|1|AA|A|1254
4V87|1|AA|U|1255
4V87|1|AA|G|1256
Current chains
- Chain AA
- RNA (2909-MER)
Nearby chains
- Chain A1
- 50S ribosomal protein L20
- Chain A2
- 50S ribosomal protein L21
- Chain A8
- 50S ribosomal protein L35
- Chain AF
- 50S ribosomal protein L4
- Chain AO
- 50S ribosomal protein L15
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