J5_4V8A_009

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V8A|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8A_009 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0492

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8A|1|BA|C|47
4V8A|1|BA|G|48
4V8A|1|BA|A|49
4V8A|1|BA|U|50
4V8A|1|BA|G|51
4V8A|1|BA|A|52
4V8A|1|BA|A|53
4V8A|1|BA|G|54
*
4V8A|1|BA|C|116
4V8A|1|BA|G|117
4V8A|1|BA|A|118
4V8A|1|BA|A|119
4V8A|1|BA|U|120
4V8A|1|BA|G|121
*
4V8A|1|BA|C|130
4V8A|1|BA|G|131
*
4V8A|1|BA|C|148
4V8A|1|BA|A|149
4V8A|1|BA|C|150
*
4V8A|1|BA|G|176
4V8A|1|BA|G|177
4V8A|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BX

50S ribosomal protein L23