J5_4V8C_001

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V8C|1|AA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8C_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0612

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V8C|1|AA|C|47
4V8C|1|AA|G|48
4V8C|1|AA|A|49
4V8C|1|AA|U|50
4V8C|1|AA|G|51
4V8C|1|AA|A|52
4V8C|1|AA|A|53
4V8C|1|AA|G|54
*
4V8C|1|AA|C|116
4V8C|1|AA|G|117
4V8C|1|AA|A|118
4V8C|1|AA|A|119
4V8C|1|AA|U|120
4V8C|1|AA|G|121
*
4V8C|1|AA|C|130
4V8C|1|AA|G|131
*
4V8C|1|AA|C|148
4V8C|1|AA|A|149
4V8C|1|AA|C|150
*
4V8C|1|AA|G|176
4V8C|1|AA|G|177
4V8C|1|AA|G|178

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AT

50S ribosomal protein L23