J5_4V8E_016
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V8E|1|CA|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8E_016 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0763
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V8E|1|CA|C|608
4V8E|1|CA|G|609
4V8E|1|CA|A|610
4V8E|1|CA|C|611
4V8E|1|CA|U|612
4V8E|1|CA|C|613
*
4V8E|1|CA|G|716
4V8E|1|CA|G|717
4V8E|1|CA|A|718
4V8E|1|CA|C|719
*
4V8E|1|CA|G|857
4V8E|1|CA|U|858
4V8E|1|CA|U|859
4V8E|1|CA|C|860
*
4V8E|1|CA|G|1241
4V8E|1|CA|C|1242
*
4V8E|1|CA|G|1297
4V8E|1|CA|C|1298
4V8E|1|CA|G|1299
4V8E|1|CA|A|1300
4V8E|1|CA|A|1301
4V8E|1|CA|U|1302
4V8E|1|CA|G|1303
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C1
- 50S ribosomal protein L20
- Chain C2
- 50S ribosomal protein L21
- Chain C8
- 50S ribosomal protein L35
- Chain CF
- 50S ribosomal protein L4
- Chain CO
- 50S ribosomal protein L15
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