J5_4V8E_018
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4V8E|1|CA|G|1790, 4V8E|1|CA|A|1794, 4V8E|1|CA|G|1795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8E_018 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0985
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8E|1|CA|G|1722
4V8E|1|CA|C|1723
4V8E|1|CA|A|1724
4V8E|1|CA|A|1725
4V8E|1|CA|G|1726
4V8E|1|CA|U|1727
4V8E|1|CA|U|1728
4V8E|1|CA|G|1729
4V8E|1|CA|G|1730
*
4V8E|1|CA|U|1754
4V8E|1|CA|G|1755
*
4V8E|1|CA|C|1783
4V8E|1|CA|C|1784
*
4V8E|1|CA|G|1788
4V8E|1|CA|U|1789
4V8E|1|CA|G|1790
4V8E|1|CA|A|1791
4V8E|1|CA|A|1792
4V8E|1|CA|C|1793
4V8E|1|CA|A|1794
4V8E|1|CA|G|1795
4V8E|1|CA|G|1796
*
4V8E|1|CA|C|2011
4V8E|1|CA|G|2012
4V8E|1|CA|C|2013
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain CE
- 50S ribosomal protein L3
- Chain CN
- 50S ribosomal protein L14
- Chain CR
- 50S ribosomal protein L19
- Chain DA
- Small subunit ribosomal RNA; SSU rRNA
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