J5_4V8E_020
3D structure
- PDB id
- 4V8E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V8E|1|CA|U|2099, 4V8E|1|CA|G|2441, 4V8E|1|CA|G|2442, 4V8E|1|CA|A|2443, 4V8E|1|CA|U|2444
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8E_020 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0869
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8E|1|CA|U|2097
4V8E|1|CA|U|2098
4V8E|1|CA|U|2099
4V8E|1|CA|A|2100
*
4V8E|1|CA|U|2256
4V8E|1|CA|U|2257
4V8E|1|CA|U|2258
4V8E|1|CA|G|2259
*
4V8E|1|CA|C|2271
4V8E|1|CA|G|2272
*
4V8E|1|CA|C|2294
4V8E|1|CA|G|2295
*
4V8E|1|CA|C|2440
4V8E|1|CA|G|2441
4V8E|1|CA|G|2442
4V8E|1|CA|A|2443
4V8E|1|CA|U|2444
4V8E|1|CA|A|2445
4V8E|1|CA|A|2446
4V8E|1|CA|A|2447
4V8E|1|CA|A|2448
Current chains
- Chain CA
- RNA (2912-MER)
Nearby chains
- Chain C3
- 50S ribosomal protein L27
- Chain CD
- 50S ribosomal protein L2
- Chain CO
- 50S ribosomal protein L15
- Chain CZ
- 50S ribosomal protein L28
- Chain DD
- TRNA-TYR
Coloring options: