J5_4V8F_001

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V8F|1|AA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8F_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0662

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V8F|1|AA|C|47
4V8F|1|AA|G|48
4V8F|1|AA|A|49
4V8F|1|AA|U|50
4V8F|1|AA|G|51
4V8F|1|AA|A|52
4V8F|1|AA|A|53
4V8F|1|AA|G|54
*
4V8F|1|AA|C|116
4V8F|1|AA|G|117
4V8F|1|AA|A|118
4V8F|1|AA|A|119
4V8F|1|AA|U|120
4V8F|1|AA|G|121
*
4V8F|1|AA|C|130
4V8F|1|AA|G|131
*
4V8F|1|AA|C|148
4V8F|1|AA|A|149
4V8F|1|AA|C|150
*
4V8F|1|AA|G|176
4V8F|1|AA|G|177
4V8F|1|AA|G|178

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AT

50S ribosomal protein L23