J5_4V8J_009

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V8J_009 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0837

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V8J|1|CA|C|36
4V8J|1|CA|U|37
4V8J|1|CA|G|38
4V8J|1|CA|G|39
*
4V8J|1|CA|C|398
4V8J|1|CA|U|399
4V8J|1|CA|U|400
4V8J|1|CA|G|401
*
4V8J|1|CA|C|431
4V8J|1|CA|U|432
4V8J|1|CA|G|433
4V8J|1|CA|A|434
4V8J|1|CA|A|435
4V8J|1|CA|C|436
*
4V8J|1|CA|G|476
4V8J|1|CA|G|477
4V8J|1|CA|U|478
4V8J|1|CA|A|479
4V8J|1|CA|A|480
4V8J|1|CA|U|481
4V8J|1|CA|A|482
4V8J|1|CA|G|483
*
4V8J|1|CA|C|528
4V8J|1|CA|G|529
4V8J|1|CA|A|530
4V8J|1|CA|G|531

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12