J5_4V8J_010
3D structure
- PDB id
- 4V8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome ram mutation G347U.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V8J|1|CA|A|102, 4V8J|1|CA|C|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8J_010 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.081
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8J|1|CA|C|58
4V8J|1|CA|A|59
4V8J|1|CA|A|60
4V8J|1|CA|G|61
*
4V8J|1|CA|C|99
4V8J|1|CA|G|100
4V8J|1|CA|G|101
4V8J|1|CA|A|102
4V8J|1|CA|C|103
4V8J|1|CA|G|104
4V8J|1|CA|G|105
4V8J|1|CA|G|106
*
4V8J|1|CA|C|309
4V8J|1|CA|A|310
4V8J|1|CA|G|311
*
4V8J|1|CA|C|332
4V8J|1|CA|A|333
4V8J|1|CA|C|334
*
4V8J|1|CA|G|345
4V8J|1|CA|G|346
4V8J|1|CA|C|347
4V8J|1|CA|A|348
4V8J|1|CA|G|349
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CP
- 30S ribosomal protein S16
- Chain CT
- 30S ribosomal protein S20
- Chain DO
- 50S ribosomal protein L14
- Chain DT
- 50S ribosomal protein L19
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