J5_4V8P_001
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AAG*CGAUGAAG*UGAACG*UG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 4V8P|1|B2|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8P_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1065
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V8P|1|A1|A|18
4V8P|1|A1|A|19
4V8P|1|A1|G|20
*
4V8P|1|B2|C|38
4V8P|1|B2|G|39
4V8P|1|B2|A|40
4V8P|1|B2|U|41
4V8P|1|B2|G|42
4V8P|1|B2|A|43
4V8P|1|B2|A|44
4V8P|1|B2|G|45
*
4V8P|1|B2|U|103
4V8P|1|B2|G|104
4V8P|1|B2|A|105
4V8P|1|B2|A|106
4V8P|1|B2|C|107
4V8P|1|B2|G|108
*
4V8P|1|B2|U|116
4V8P|1|B2|G|117
*
4V8P|1|B2|C|134
4V8P|1|B2|A|135
4V8P|1|B2|U|136
Current chains
- Chain A1
- 26S RRNA
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain AA
- RIBOSOMAL PROTEIN L37
- Chain AB
- RPL39
- Chain BL
- RIBOSOMAL PROTEIN L15
- Chain BR
- RPL23A
- Chain BU
- RPL35
Coloring options: