J5_4V8P_003
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGAG*CGAAA*UGAGUACAAG*CAC*GAAGAG
- Length
- 28 nucleotides
- Bulged bases
- 4V8P|1|A1|G|741, 4V8P|1|A1|U|742
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8P|1|A1|C|699
4V8P|1|A1|G|700
4V8P|1|A1|A|701
4V8P|1|A1|G|702
*
4V8P|1|A1|C|727
4V8P|1|A1|G|728
4V8P|1|A1|A|729
4V8P|1|A1|A|730
4V8P|1|A1|A|731
*
4V8P|1|A1|U|738
4V8P|1|A1|G|739
4V8P|1|A1|A|740
4V8P|1|A1|G|741
4V8P|1|A1|U|742
4V8P|1|A1|A|743
4V8P|1|A1|C|744
4V8P|1|A1|A|745
4V8P|1|A1|A|746
4V8P|1|A1|G|747
*
4V8P|1|A1|C|773
4V8P|1|A1|A|774
4V8P|1|A1|C|775
*
4V8P|1|A1|G|807
4V8P|1|A1|A|808
4V8P|1|A1|A|809
4V8P|1|A1|G|810
4V8P|1|A1|A|811
4V8P|1|A1|G|812
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AQ
- 60S RIBOSOMAL PROTEIN L36
- Chain AT
- RPL29
- Chain AU
- RPL13
- Chain BC
- RPL4
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BN
- RPL18
Coloring options: