J5_4V8Q_003
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V8Q|1|AA|A|532, 4V8Q|1|AA|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8Q_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.086
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V8Q|1|AA|C|531
4V8Q|1|AA|A|532
4V8Q|1|AA|G|533
*
4V8Q|1|AA|C|560
4V8Q|1|AA|G|561
4V8Q|1|AA|U|562
4V8Q|1|AA|G|563
4V8Q|1|AA|C|564
*
4V8Q|1|AA|G|577
4V8Q|1|AA|A|578
4V8Q|1|AA|G|579
*
4V8Q|1|AA|C|1261
4V8Q|1|AA|A|1262
*
4V8Q|1|AA|U|2017
4V8Q|1|AA|G|2018
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A5
- 50S RIBOSOMAL PROTEIN L32
- Chain AF
- 50S RIBOSOMAL PROTEIN L4
- Chain AN
- 50S RIBOSOMAL PROTEIN L13
- Chain AU
- 50S RIBOSOMAL PROTEIN L20
- Chain AV
- 50S RIBOSOMAL PROTEIN L21
- Chain AW
- 50S RIBOSOMAL PROTEIN L22
Coloring options: