J5_4V8T_003
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 4V8T|1|5|U|719, 4V8T|1|5|A|784, 4V8T|1|5|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8T_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0594
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8T|1|5|C|675
4V8T|1|5|G|676
4V8T|1|5|A|677
4V8T|1|5|G|678
*
4V8T|1|5|C|702
4V8T|1|5|G|703
4V8T|1|5|U|704
4V8T|1|5|A|705
4V8T|1|5|A|706
*
4V8T|1|5|U|713
4V8T|1|5|G|714
4V8T|1|5|A|715
4V8T|1|5|A|716
4V8T|1|5|C|717
4V8T|1|5|G|718
4V8T|1|5|U|719
4V8T|1|5|A|720
4V8T|1|5|G|721
*
4V8T|1|5|C|749
4V8T|1|5|G|750
4V8T|1|5|A|751
*
4V8T|1|5|U|782
4V8T|1|5|A|783
4V8T|1|5|A|784
4V8T|1|5|G|785
4V8T|1|5|A|786
4V8T|1|5|G|787
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain C
- 60S RIBOSOMAL PROTEIN L4-A
- Chain L
- 60S RIBOSOMAL PROTEIN L13-A
- Chain Q
- 60S RIBOSOMAL PROTEIN L18-B
- Chain a
- 60S RIBOSOMAL PROTEIN L28
- Chain b
- 60S RIBOSOMAL PROTEIN L29
- Chain i
- 60S RIBOSOMAL PROTEIN L36-A
Coloring options: