J5_4V8T_004
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 4V8T|1|5|G|2116, 4V8T|1|5|G|2121
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V8T_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0369
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8T|1|5|G|1906
4V8T|1|5|C|1907
4V8T|1|5|A|1908
4V8T|1|5|A|1909
4V8T|1|5|A|1910
4V8T|1|5|A|1911
4V8T|1|5|U|1912
4V8T|1|5|A|1913
4V8T|1|5|G|1914
*
4V8T|1|5|U|1938
4V8T|1|5|G|1939
*
4V8T|1|5|U|2109
4V8T|1|5|G|2110
*
4V8T|1|5|C|2114
4V8T|1|5|G|2115
4V8T|1|5|G|2116
4V8T|1|5|A|2117
4V8T|1|5|C|2118
4V8T|1|5|A|2119
4V8T|1|5|A|2120
4V8T|1|5|G|2121
4V8T|1|5|G|2122
*
4V8T|1|5|C|2331
4V8T|1|5|A|2332
4V8T|1|5|C|2333
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain R
- 60S RIBOSOMAL PROTEIN L19-B
- Chain V
- 60S RIBOSOMAL PROTEIN L23-A
- Chain W
- 60S RIBOSOMAL PROTEIN L24-A
Coloring options: