J5_4V91_003
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 4V91|1|1|U|719, 4V91|1|1|A|784, 4V91|1|1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V91_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0774
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_23272.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V91|1|1|C|675
4V91|1|1|G|676
4V91|1|1|A|677
4V91|1|1|G|678
*
4V91|1|1|C|702
4V91|1|1|G|703
4V91|1|1|U|704
4V91|1|1|A|705
4V91|1|1|A|706
*
4V91|1|1|U|713
4V91|1|1|G|714
4V91|1|1|A|715
4V91|1|1|A|716
4V91|1|1|C|717
4V91|1|1|G|718
4V91|1|1|U|719
4V91|1|1|A|720
4V91|1|1|G|721
*
4V91|1|1|C|749
4V91|1|1|G|750
4V91|1|1|A|751
*
4V91|1|1|U|782
4V91|1|1|A|783
4V91|1|1|A|784
4V91|1|1|G|785
4V91|1|1|A|786
4V91|1|1|G|787
Current chains
- Chain 1
- 25S RRNA
Nearby chains
- Chain C
- UL4
- Chain L
- EL13
- Chain Q
- EL18
- Chain a
- UL15
- Chain b
- EL29
- Chain i
- EL36
Coloring options: