3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
Length
27 nucleotides
Bulged bases
4V91|1|1|U|719, 4V91|1|1|A|784, 4V91|1|1|G|785
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4V91_003 not in the Motif Atlas
Homologous match to J5_8P9A_012
Geometric discrepancy: 0.0774
The information below is about J5_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_23272.1
Basepair signature
cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V91|1|1|C|675
4V91|1|1|G|676
4V91|1|1|A|677
4V91|1|1|G|678
*
4V91|1|1|C|702
4V91|1|1|G|703
4V91|1|1|U|704
4V91|1|1|A|705
4V91|1|1|A|706
*
4V91|1|1|U|713
4V91|1|1|G|714
4V91|1|1|A|715
4V91|1|1|A|716
4V91|1|1|C|717
4V91|1|1|G|718
4V91|1|1|U|719
4V91|1|1|A|720
4V91|1|1|G|721
*
4V91|1|1|C|749
4V91|1|1|G|750
4V91|1|1|A|751
*
4V91|1|1|U|782
4V91|1|1|A|783
4V91|1|1|A|784
4V91|1|1|G|785
4V91|1|1|A|786
4V91|1|1|G|787

Current chains

Chain 1
25S RRNA

Nearby chains

Chain C
UL4
Chain L
EL13
Chain Q
EL18
Chain a
UL15
Chain b
EL29
Chain i
EL36

Coloring options:


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