J5_4V91_006

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

4V91|1|1|G|2418, 4V91|1|1|A|2799, 4V91|1|1|G|2800, 4V91|1|1|A|2801, 4V91|1|1|A|2802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V91_006 not in the Motif Atlas

Homologous match to J5_8C3A_006

Geometric discrepancy: 0.129

The information below is about J5_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V91|1|1|U|2416
4V91|1|1|U|2417
4V91|1|1|G|2418
4V91|1|1|A|2419
*
4V91|1|1|U|2611
4V91|1|1|U|2612
4V91|1|1|U|2613
4V91|1|1|G|2614
*
4V91|1|1|C|2627
4V91|1|1|A|2628
*
4V91|1|1|U|2650
4V91|1|1|G|2651
*
4V91|1|1|C|2798
4V91|1|1|A|2799
4V91|1|1|G|2800
4V91|1|1|A|2801
4V91|1|1|A|2802
4V91|1|1|A|2803
4V91|1|1|A|2804

Current chains

Chain 1

25S RRNA

Nearby chains

Chain A

UL2

Chain N

EL15

Chain Q

EL18

Chain T

EL21

Chain a

UL15

Chain b

EL29

Chain o

EL42