J5_4V97_003

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V97|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V97_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0823

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V97|1|BA|C|47
4V97|1|BA|G|48
4V97|1|BA|A|49
4V97|1|BA|U|50
4V97|1|BA|G|51
4V97|1|BA|A|52
4V97|1|BA|A|53
4V97|1|BA|G|54
*
4V97|1|BA|C|116
4V97|1|BA|G|117
4V97|1|BA|A|118
4V97|1|BA|A|119
4V97|1|BA|U|120
4V97|1|BA|G|121
*
4V97|1|BA|C|130
4V97|1|BA|G|131
*
4V97|1|BA|C|148
4V97|1|BA|A|149
4V97|1|BA|C|150
*
4V97|1|BA|G|176
4V97|1|BA|G|177
4V97|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L34

Chain BX

50S RIBOSOMAL PROTEIN L23