J5_4V9I_001

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9I_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0787

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9I|1|AA|C|36
4V9I|1|AA|U|37
4V9I|1|AA|G|38
4V9I|1|AA|G|39
*
4V9I|1|AA|C|403
4V9I|1|AA|U|404
4V9I|1|AA|U|405
4V9I|1|AA|G|406
*
4V9I|1|AA|C|436
4V9I|1|AA|U|437
4V9I|1|AA|G|438
4V9I|1|AA|A|439
4V9I|1|AA|A|441
4V9I|1|AA|C|442
*
4V9I|1|AA|G|492
4V9I|1|AA|G|493
4V9I|1|AA|U|494
4V9I|1|AA|A|495
4V9I|1|AA|A|496
4V9I|1|AA|U|498
4V9I|1|AA|A|499
4V9I|1|AA|G|500
*
4V9I|1|AA|C|545
4V9I|1|AA|G|546
4V9I|1|AA|A|547
4V9I|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal protein S4

Chain AL

30S Ribosomal protein S12