J5_4V9I_005
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V9I|1|BA|U|1300
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9I_005 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0802
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|BA|C|606
4V9I|1|BA|G|607
4V9I|1|BA|A|608
4V9I|1|BA|C|609
4V9I|1|BA|U|610
4V9I|1|BA|C|611
*
4V9I|1|BA|G|714
4V9I|1|BA|G|715
4V9I|1|BA|A|716
4V9I|1|BA|C|717
*
4V9I|1|BA|G|855
4V9I|1|BA|U|856
4V9I|1|BA|U|857
4V9I|1|BA|C|858
*
4V9I|1|BA|G|1239
4V9I|1|BA|C|1240
*
4V9I|1|BA|G|1295
4V9I|1|BA|C|1296
4V9I|1|BA|G|1297
4V9I|1|BA|A|1298
4V9I|1|BA|A|1299
4V9I|1|BA|U|1300
4V9I|1|BA|G|1301
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B8
- 50S ribosomal protein L35
- Chain BF
- 50S ribosomal protein L4
- Chain BP
- 50S ribosomal protein L15
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
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