J5_4V9I_008
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4V9I|1|BA|U|2097, 4V9I|1|BA|G|2439, 4V9I|1|BA|G|2440, 4V9I|1|BA|A|2441, 4V9I|1|BA|U|2442
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9I_008 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0839
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V9I|1|BA|U|2095
4V9I|1|BA|U|2096
4V9I|1|BA|U|2097
4V9I|1|BA|A|2098
*
4V9I|1|BA|U|2254
4V9I|1|BA|U|2255
4V9I|1|BA|U|2256
4V9I|1|BA|G|2257
*
4V9I|1|BA|C|2269
4V9I|1|BA|G|2270
*
4V9I|1|BA|C|2292
4V9I|1|BA|G|2293
*
4V9I|1|BA|C|2438
4V9I|1|BA|G|2439
4V9I|1|BA|G|2440
4V9I|1|BA|A|2441
4V9I|1|BA|U|2442
4V9I|1|BA|A|2443
4V9I|1|BA|A|2444
4V9I|1|BA|A|2445
4V9I|1|BA|A|2446
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain B1
- 50S ribosomal protein L28
- Chain B8
- 50S ribosomal protein L35
- Chain BD
- 50S ribosomal protein L2
- Chain BP
- 50S ribosomal protein L15
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