J5_4V9I_009

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9I_009 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0718

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9I|1|CA|C|37
4V9I|1|CA|U|38
4V9I|1|CA|G|39
4V9I|1|CA|G|40
*
4V9I|1|CA|C|399
4V9I|1|CA|U|400
4V9I|1|CA|U|401
4V9I|1|CA|G|402
*
4V9I|1|CA|C|432
4V9I|1|CA|U|433
4V9I|1|CA|G|434
4V9I|1|CA|A|435
4V9I|1|CA|A|436
4V9I|1|CA|C|437
*
4V9I|1|CA|G|477
4V9I|1|CA|G|478
4V9I|1|CA|U|479
4V9I|1|CA|A|480
4V9I|1|CA|A|481
4V9I|1|CA|U|482
4V9I|1|CA|A|483
4V9I|1|CA|G|484
*
4V9I|1|CA|C|529
4V9I|1|CA|G|530
4V9I|1|CA|A|531
4V9I|1|CA|G|532

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain CD

30S Ribosomal protein S4

Chain CL

30S Ribosomal protein S12