J5_4V9I_011

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9I|1|DA|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9I_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0701

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9I|1|DA|C|45
4V9I|1|DA|G|46
4V9I|1|DA|A|47
4V9I|1|DA|U|48
4V9I|1|DA|G|49
4V9I|1|DA|A|50
4V9I|1|DA|A|51
4V9I|1|DA|G|52
*
4V9I|1|DA|C|113
4V9I|1|DA|G|114
4V9I|1|DA|A|115
4V9I|1|DA|A|116
4V9I|1|DA|U|117
4V9I|1|DA|G|118
*
4V9I|1|DA|C|127
4V9I|1|DA|G|128
*
4V9I|1|DA|C|147
4V9I|1|DA|A|148
4V9I|1|DA|C|149
*
4V9I|1|DA|G|164
4V9I|1|DA|G|165
4V9I|1|DA|G|166

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23