J5_4V9N_011

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9N|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9N_011 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0628

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9N|1|DA|C|47
4V9N|1|DA|G|48
4V9N|1|DA|A|49
4V9N|1|DA|U|50
4V9N|1|DA|G|51
4V9N|1|DA|A|52
4V9N|1|DA|A|53
4V9N|1|DA|G|54
*
4V9N|1|DA|C|116
4V9N|1|DA|G|117
4V9N|1|DA|A|118
4V9N|1|DA|A|119
4V9N|1|DA|U|120
4V9N|1|DA|G|121
*
4V9N|1|DA|C|130
4V9N|1|DA|G|131
*
4V9N|1|DA|C|148
4V9N|1|DA|A|149
4V9N|1|DA|C|150
*
4V9N|1|DA|G|176
4V9N|1|DA|G|177
4V9N|1|DA|G|178

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23