J5_4V9O_031
3D structure
- PDB id
- 4V9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Control of ribosomal subunit rotation by elongation factor G
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4V9O|1|GA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9O_031 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0759
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V9O|1|GA|C|584
4V9O|1|GA|G|585
4V9O|1|GA|A|586
4V9O|1|GA|C|587
4V9O|1|GA|U|588
4V9O|1|GA|U|589
*
4V9O|1|GA|A|668
4V9O|1|GA|G|669
4V9O|1|GA|A|670
4V9O|1|GA|C|671
*
4V9O|1|GA|G|809
4V9O|1|GA|U|810
4V9O|1|GA|U|811
4V9O|1|GA|C|812
*
4V9O|1|GA|G|1195
4V9O|1|GA|C|1196
*
4V9O|1|GA|G|1250
4V9O|1|GA|C|1251
4V9O|1|GA|G|1252
4V9O|1|GA|A|1253
4V9O|1|GA|A|1254
4V9O|1|GA|U|1255
4V9O|1|GA|G|1256
Current chains
- Chain GA
- 23S rRNA
Nearby chains
- Chain G3
- 50S ribosomal protein L35
- Chain GE
- 50S ribosomal protein L4
- Chain GL
- 50S ribosomal protein L15
- Chain GQ
- 50S ribosomal protein L20
- Chain GR
- 50S ribosomal protein L21
Coloring options: