J5_4V9Q_019

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4V9Q|1|BA|A|109, 4V9Q|1|BA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9Q_019 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0791

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V9Q|1|BA|C|58
4V9Q|1|BA|A|59
4V9Q|1|BA|A|60
4V9Q|1|BA|G|61
*
4V9Q|1|BA|C|106
4V9Q|1|BA|G|107
4V9Q|1|BA|G|108
4V9Q|1|BA|A|109
4V9Q|1|BA|C|110
4V9Q|1|BA|G|111
4V9Q|1|BA|G|112
4V9Q|1|BA|G|113
*
4V9Q|1|BA|C|314
4V9Q|1|BA|A|315
4V9Q|1|BA|G|316
*
4V9Q|1|BA|C|337
4V9Q|1|BA|A|338
4V9Q|1|BA|C|339
*
4V9Q|1|BA|G|350
4V9Q|1|BA|G|351
4V9Q|1|BA|C|352
4V9Q|1|BA|A|353
4V9Q|1|BA|G|354

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L14

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20