J5_4V9S_003

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V9S|1|BA|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V9S_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0451

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|BA|C|46
4V9S|1|BA|G|47
4V9S|1|BA|A|48
4V9S|1|BA|U|49
4V9S|1|BA|G|50
4V9S|1|BA|A|51
4V9S|1|BA|A|52
4V9S|1|BA|G|53
*
4V9S|1|BA|C|114
4V9S|1|BA|G|115
4V9S|1|BA|A|116
4V9S|1|BA|A|117
4V9S|1|BA|U|118
4V9S|1|BA|G|119
*
4V9S|1|BA|C|128
4V9S|1|BA|G|129
*
4V9S|1|BA|C|148
4V9S|1|BA|A|149
4V9S|1|BA|C|150
*
4V9S|1|BA|G|165
4V9S|1|BA|G|166
4V9S|1|BA|G|167

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34

Chain BX

50S Ribosomal Protein L23