J5_4V9S_005
3D structure
- PDB id
- 4V9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic GE82832 bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4V9S|1|BA|A|557, 4V9S|1|BA|U|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V9S_005 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0661
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9S|1|BA|C|556
4V9S|1|BA|A|557
4V9S|1|BA|G|558
*
4V9S|1|BA|C|583
4V9S|1|BA|G|584
4V9S|1|BA|U|585
4V9S|1|BA|G|586
4V9S|1|BA|C|587
*
4V9S|1|BA|G|600
4V9S|1|BA|A|601
4V9S|1|BA|G|602
*
4V9S|1|BA|C|1307
4V9S|1|BA|A|1308
*
4V9S|1|BA|U|2039
4V9S|1|BA|G|2040
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- 50S Ribosomal Protein L32
- Chain BF
- 50S Ribosomal Protein L4
- Chain BU
- 50S Ribosomal Protein L20
- Chain BV
- 50S Ribosomal Protein L21
- Chain BW
- 50S Ribosomal Protein L22
Coloring options: