J5_4W29_009

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UUUA*UUUG*CG*CG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

4W29|1|BA|U|2076, 4W29|1|BA|G|2428, 4W29|1|BA|G|2429, 4W29|1|BA|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W29_009 not in the Motif Atlas

Homologous match to J5_9DFE_007

Geometric discrepancy: 0.2009

The information below is about J5_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4W29|1|BA|U|2074
4W29|1|BA|U|2075
4W29|1|BA|U|2076
4W29|1|BA|A|2077
*
4W29|1|BA|U|2243
4W29|1|BA|U|2244
4W29|1|BA|U|2245
4W29|1|BA|G|2246
*
4W29|1|BA|C|2258
4W29|1|BA|G|2259
*
4W29|1|BA|C|2281
4W29|1|BA|G|2282
*
4W29|1|BA|C|2427
4W29|1|BA|G|2428
4W29|1|BA|G|2429
4W29|1|BA|A|2430
4W29|1|BA|U|2431
4W29|1|BA|A|2432
4W29|1|BA|A|2433
4W29|1|BA|A|2434
4W29|1|BA|A|2435

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B0

50S ribosomal protein L27

Chain B1

50S ribosomal protein L28

Chain B6

50S ribosomal protein L33

Chain BD

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15