J5_4W29_010

3D structure

PDB id

4W29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W29_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1417

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4W29|1|CA|C|36
4W29|1|CA|U|37
4W29|1|CA|G|38
4W29|1|CA|G|39
*
4W29|1|CA|C|403
4W29|1|CA|U|404
4W29|1|CA|U|405
4W29|1|CA|G|406
*
4W29|1|CA|C|436
4W29|1|CA|U|437
4W29|1|CA|G|438
4W29|1|CA|A|440
4W29|1|CA|A|441
4W29|1|CA|C|442
*
4W29|1|CA|G|492
4W29|1|CA|G|493
4W29|1|CA|U|494
4W29|1|CA|A|495
4W29|1|CA|A|497
4W29|1|CA|U|498
4W29|1|CA|A|499
4W29|1|CA|G|500
*
4W29|1|CA|C|545
4W29|1|CA|G|546
4W29|1|CA|A|547
4W29|1|CA|G|548

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12

Chain CY

Elongation factor G