J5_4W2G_005

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

4W2G|1|BA|A|557, 4W2G|1|BA|U|585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4W2G_005 not in the Motif Atlas

Homologous match to J5_9DFE_003

Geometric discrepancy: 0.0492

The information below is about J5_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4W2G|1|BA|C|556
4W2G|1|BA|A|557
4W2G|1|BA|G|558
*
4W2G|1|BA|C|583
4W2G|1|BA|G|584
4W2G|1|BA|U|585
4W2G|1|BA|G|586
4W2G|1|BA|C|587
*
4W2G|1|BA|G|600
4W2G|1|BA|A|601
4W2G|1|BA|G|602
*
4W2G|1|BA|C|1307
4W2G|1|BA|A|1308
*
4W2G|1|BA|U|2039
4W2G|1|BA|G|2040

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BF

50S Ribosomal Protein L4

Chain BU

50S Ribosomal Protein L20

Chain BV

50S Ribosomal Protein L21

Chain BW

50S Ribosomal Protein L22