3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CAG*CGUGC*GAG*CA*UG
Length
15 nucleotides
Bulged bases
4W2G|1|BA|A|557, 4W2G|1|BA|U|585
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4W2G_005 not in the Motif Atlas
Homologous match to J5_9DFE_003
Geometric discrepancy: 0.0492
The information below is about J5_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4W2G|1|BA|C|556
4W2G|1|BA|A|557
4W2G|1|BA|G|558
*
4W2G|1|BA|C|583
4W2G|1|BA|G|584
4W2G|1|BA|U|585
4W2G|1|BA|G|586
4W2G|1|BA|C|587
*
4W2G|1|BA|G|600
4W2G|1|BA|A|601
4W2G|1|BA|G|602
*
4W2G|1|BA|C|1307
4W2G|1|BA|A|1308
*
4W2G|1|BA|U|2039
4W2G|1|BA|G|2040

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain B5
50S Ribosomal Protein L32
Chain BF
50S Ribosomal Protein L4
Chain BU
50S Ribosomal Protein L20
Chain BV
50S Ribosomal Protein L21
Chain BW
50S Ribosomal Protein L22

Coloring options:


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