J5_4WOI_006

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4WOI|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WOI_006 not in the Motif Atlas

Homologous match to J5_5J7L_015

Geometric discrepancy: 0.0546

The information below is about J5_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|BA|C|584
4WOI|1|BA|G|585
4WOI|1|BA|A|586
4WOI|1|BA|C|587
4WOI|1|BA|U|588
4WOI|1|BA|U|589
*
4WOI|1|BA|A|668
4WOI|1|BA|G|669
4WOI|1|BA|A|670
4WOI|1|BA|C|671
*
4WOI|1|BA|G|809
4WOI|1|BA|U|810
4WOI|1|BA|U|811
4WOI|1|BA|C|812
*
4WOI|1|BA|G|1195
4WOI|1|BA|C|1196
*
4WOI|1|BA|G|1250
4WOI|1|BA|C|1251
4WOI|1|BA|G|1252
4WOI|1|BA|A|1253
4WOI|1|BA|A|1254
4WOI|1|BA|U|1255
4WOI|1|BA|G|1256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BQ

50S ribosomal protein L20

Chain BR

50S ribosomal protein L21