J5_4WOI_009
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4WOI|1|BA|U|2076, 4WOI|1|BA|G|2428, 4WOI|1|BA|G|2429, 4WOI|1|BA|A|2430, 4WOI|1|BA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WOI_009 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.084
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4WOI|1|BA|U|2074
4WOI|1|BA|U|2075
4WOI|1|BA|U|2076
4WOI|1|BA|A|2077
*
4WOI|1|BA|U|2243
4WOI|1|BA|U|2244
4WOI|1|BA|U|2245
4WOI|1|BA|G|2246
*
4WOI|1|BA|C|2258
4WOI|1|BA|U|2259
*
4WOI|1|BA|A|2281
4WOI|1|BA|G|2282
*
4WOI|1|BA|C|2427
4WOI|1|BA|G|2428
4WOI|1|BA|G|2429
4WOI|1|BA|A|2430
4WOI|1|BA|U|2431
4WOI|1|BA|A|2432
4WOI|1|BA|A|2433
4WOI|1|BA|A|2434
4WOI|1|BA|A|2435
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L33
- Chain BC
- 50S ribosomal protein L2
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L28
Coloring options: