J5_4WQ1_005
3D structure
- PDB id
- 4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4WQ1|1|14|A|532, 4WQ1|1|14|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WQ1_005 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0809
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WQ1|1|14|C|531
4WQ1|1|14|A|532
4WQ1|1|14|G|533
*
4WQ1|1|14|C|560
4WQ1|1|14|G|561
4WQ1|1|14|U|562
4WQ1|1|14|G|563
4WQ1|1|14|C|564
*
4WQ1|1|14|G|577
4WQ1|1|14|A|578
4WQ1|1|14|G|579
*
4WQ1|1|14|C|1261
4WQ1|1|14|A|1262
*
4WQ1|1|14|U|2017
4WQ1|1|14|G|2018
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain 95
- 50S ribosomal protein L21
- Chain A5
- 50S ribosomal protein L22
- Chain J5
- 50S ribosomal protein L32
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