J5_4WQF_001

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WQF|1|AA|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQF_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0494

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WQF|1|AA|C|46
4WQF|1|AA|G|47
4WQF|1|AA|A|48
4WQF|1|AA|U|49
4WQF|1|AA|G|50
4WQF|1|AA|A|51
4WQF|1|AA|A|52
4WQF|1|AA|G|53
*
4WQF|1|AA|C|114
4WQF|1|AA|G|115
4WQF|1|AA|A|116
4WQF|1|AA|A|117
4WQF|1|AA|U|118
4WQF|1|AA|G|119
*
4WQF|1|AA|C|128
4WQF|1|AA|G|129
*
4WQF|1|AA|C|148
4WQF|1|AA|A|149
4WQF|1|AA|C|150
*
4WQF|1|AA|G|165
4WQF|1|AA|G|166
4WQF|1|AA|G|167

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AX

50S ribosomal protein L23