J5_4WQU_010

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WQU|1|CA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WQU_010 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0603

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4WQU|1|CA|C|47
4WQU|1|CA|G|48
4WQU|1|CA|A|49
4WQU|1|CA|U|50
4WQU|1|CA|G|51
4WQU|1|CA|A|52
4WQU|1|CA|A|53
4WQU|1|CA|G|54
*
4WQU|1|CA|C|116
4WQU|1|CA|G|117
4WQU|1|CA|A|118
4WQU|1|CA|A|119
4WQU|1|CA|U|120
4WQU|1|CA|G|121
*
4WQU|1|CA|C|130
4WQU|1|CA|G|131
*
4WQU|1|CA|C|148
4WQU|1|CA|A|149
4WQU|1|CA|C|150
*
4WQU|1|CA|G|176
4WQU|1|CA|G|177
4WQU|1|CA|G|178

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C7

50S ribosomal protein L34

Chain CX

50S ribosomal protein L23