J5_4WR6_020
3D structure
- PDB id
- 4WR6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 4WR6|1|1H|U|2076||||P_1, 4WR6|1|1H|G|2428||||P_1, 4WR6|1|1H|G|2429||||P_1, 4WR6|1|1H|A|2430||||P_1, 4WR6|1|1H|U|2431||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WR6_020 not in the Motif Atlas
- Homologous match to J5_9DFE_007
- Geometric discrepancy: 0.0803
- The information below is about J5_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4WR6|1|1H|U|2074||||P_1
4WR6|1|1H|U|2075||||P_1
4WR6|1|1H|U|2076||||P_1
4WR6|1|1H|A|2077||||P_1
*
4WR6|1|1H|U|2243||||P_1
4WR6|1|1H|U|2244||||P_1
4WR6|1|1H|U|2245||||P_1
4WR6|1|1H|G|2246||||P_1
*
4WR6|1|1H|C|2258||||P_1
4WR6|1|1H|G|2259||||P_1
*
4WR6|1|1H|C|2281||||P_1
4WR6|1|1H|G|2282||||P_1
*
4WR6|1|1H|C|2427||||P_1
4WR6|1|1H|G|2428||||P_1
4WR6|1|1H|G|2429||||P_1
4WR6|1|1H|A|2430||||P_1
4WR6|1|1H|U|2431||||P_1
4WR6|1|1H|A|2432||||P_1
4WR6|1|1H|A|2433||||P_1
4WR6|1|1H|A|2434||||P_1
4WR6|1|1H|A|2435||||P_1
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L2
- Chain 3K
- Transfer RNA; tRNA
- Chain 78
- 50S ribosomal protein L15
- Chain I8
- 50S ribosomal protein L27
- Chain J8
- 50S ribosomal protein L28
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