J5_4WRO_013

3D structure

PDB id

4WRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4WRO|1|1H|U|50||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WRO_013 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0619

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4WRO|1|1H|C|47||||P_1
4WRO|1|1H|G|48||||P_1
4WRO|1|1H|A|49||||P_1
4WRO|1|1H|U|50||||P_1
4WRO|1|1H|G|51||||P_1
4WRO|1|1H|A|52||||P_1
4WRO|1|1H|A|53||||P_1
4WRO|1|1H|G|54||||P_1
*
4WRO|1|1H|C|116||||P_1
4WRO|1|1H|G|117||||P_1
4WRO|1|1H|A|118||||P_1
4WRO|1|1H|A|119||||P_1
4WRO|1|1H|U|120||||P_1
4WRO|1|1H|G|121||||P_1
*
4WRO|1|1H|C|130||||P_1
4WRO|1|1H|G|131||||P_1
*
4WRO|1|1H|C|148||||P_1
4WRO|1|1H|A|149||||P_1
4WRO|1|1H|C|150||||P_1
*
4WRO|1|1H|G|176||||P_1
4WRO|1|1H|G|177||||P_1
4WRO|1|1H|G|178||||P_1

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34