J5_4WT8_002

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4WT8|1|Ab|A|103, 4WT8|1|Ab|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WT8_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0775

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4WT8|1|Ab|C|59
4WT8|1|Ab|A|60
4WT8|1|Ab|A|61
4WT8|1|Ab|G|62
*
4WT8|1|Ab|C|100
4WT8|1|Ab|G|101
4WT8|1|Ab|G|102
4WT8|1|Ab|A|103
4WT8|1|Ab|C|104
4WT8|1|Ab|G|105
4WT8|1|Ab|G|106
4WT8|1|Ab|G|107
*
4WT8|1|Ab|C|310
4WT8|1|Ab|A|311
4WT8|1|Ab|G|312
*
4WT8|1|Ab|C|333
4WT8|1|Ab|A|334
4WT8|1|Ab|C|335
*
4WT8|1|Ab|G|346
4WT8|1|Ab|G|347
4WT8|1|Ab|C|348
4WT8|1|Ab|A|349
4WT8|1|Ab|G|350

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AU

30S ribosomal protein S20

Chain CN

50S ribosomal protein L14