J5_4WT8_003

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4WT8_003 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0942

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4WT8|1|Bb|C|37
4WT8|1|Bb|U|38
4WT8|1|Bb|G|39
4WT8|1|Bb|G|40
*
4WT8|1|Bb|C|399
4WT8|1|Bb|U|400
4WT8|1|Bb|U|401
4WT8|1|Bb|G|402
*
4WT8|1|Bb|C|432
4WT8|1|Bb|U|433
4WT8|1|Bb|G|434
4WT8|1|Bb|A|435
4WT8|1|Bb|A|436
4WT8|1|Bb|C|437
*
4WT8|1|Bb|G|477
4WT8|1|Bb|G|478
4WT8|1|Bb|U|479
4WT8|1|Bb|A|480
4WT8|1|Bb|A|481
4WT8|1|Bb|U|482
4WT8|1|Bb|A|483
4WT8|1|Bb|G|484
*
4WT8|1|Bb|C|529
4WT8|1|Bb|G|530
4WT8|1|Bb|A|531
4WT8|1|Bb|G|532

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12