J5_4WT8_004
3D structure
- PDB id
- 4WT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4WT8|1|Bb|A|103, 4WT8|1|Bb|C|348
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WT8_004 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0896
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4WT8|1|Bb|C|59
4WT8|1|Bb|A|60
4WT8|1|Bb|A|61
4WT8|1|Bb|G|62
*
4WT8|1|Bb|C|100
4WT8|1|Bb|G|101
4WT8|1|Bb|G|102
4WT8|1|Bb|A|103
4WT8|1|Bb|C|104
4WT8|1|Bb|G|105
4WT8|1|Bb|G|106
4WT8|1|Bb|G|107
*
4WT8|1|Bb|C|310
4WT8|1|Bb|A|311
4WT8|1|Bb|G|312
*
4WT8|1|Bb|C|333
4WT8|1|Bb|A|334
4WT8|1|Bb|C|335
*
4WT8|1|Bb|G|346
4WT8|1|Bb|G|347
4WT8|1|Bb|C|348
4WT8|1|Bb|A|349
4WT8|1|Bb|G|350
Current chains
- Chain Bb
- RNA (1504-MER)
Nearby chains
- Chain BP
- 30S ribosomal protein S16
- Chain BU
- 30S ribosomal protein S20
- Chain DN
- 50S ribosomal protein L14
- Chain DS
- 50S ribosomal protein L19
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