J5_4WZD_015
3D structure
- PDB id
- 4WZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with cognate tRNA-Tyr in the P-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 4WZD|1|1H|A|532||||P_1, 4WZD|1|1H|U|562||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4WZD_015 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0634
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4WZD|1|1H|C|531||||P_1
4WZD|1|1H|A|532||||P_1
4WZD|1|1H|G|533||||P_1
*
4WZD|1|1H|C|560||||P_1
4WZD|1|1H|G|561||||P_1
4WZD|1|1H|U|562||||P_1
4WZD|1|1H|G|563||||P_1
4WZD|1|1H|C|564||||P_1
*
4WZD|1|1H|G|577||||P_1
4WZD|1|1H|A|578||||P_1
4WZD|1|1H|G|579||||P_1
*
4WZD|1|1H|C|1261||||P_1
4WZD|1|1H|A|1262||||P_1
*
4WZD|1|1H|U|2017||||P_1
4WZD|1|1H|G|2018||||P_1
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain E8
- 50S ribosomal protein L22
- Chain N8
- 50S ribosomal protein L32
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