3D structure

PDB id
4XEJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
IRES bound to bacterial Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4XEJ_010 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.1094
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4XEJ|1|B16S|C|36
4XEJ|1|B16S|U|37
4XEJ|1|B16S|G|38
4XEJ|1|B16S|G|39
*
4XEJ|1|B16S|C|403
4XEJ|1|B16S|U|404
4XEJ|1|B16S|U|405
4XEJ|1|B16S|G|406
*
4XEJ|1|B16S|C|436
4XEJ|1|B16S|U|437
4XEJ|1|B16S|G|438
4XEJ|1|B16S|A|440
4XEJ|1|B16S|A|441
4XEJ|1|B16S|C|442
*
4XEJ|1|B16S|G|492
4XEJ|1|B16S|G|493
4XEJ|1|B16S|U|494
4XEJ|1|B16S|A|495
4XEJ|1|B16S|A|497
4XEJ|1|B16S|U|498
4XEJ|1|B16S|A|499
4XEJ|1|B16S|G|500
*
4XEJ|1|B16S|C|545
4XEJ|1|B16S|G|546
4XEJ|1|B16S|A|547
4XEJ|1|B16S|G|548

Current chains

Chain B16S
16S ribosomal RNA

Nearby chains

Chain BS04
30S ribosomal protein S4
Chain BS12
30S ribosomal protein S12

Coloring options:


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