J5_4Y4O_004
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 4Y4O|1|1A|U|1301
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4Y4O_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0389
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4Y4O|1|1A|C|607
4Y4O|1|1A|G|608
4Y4O|1|1A|A|609
4Y4O|1|1A|C|610
4Y4O|1|1A|U|611
4Y4O|1|1A|C|612
*
4Y4O|1|1A|G|715
4Y4O|1|1A|G|716
4Y4O|1|1A|A|717
4Y4O|1|1A|C|718
*
4Y4O|1|1A|G|856
4Y4O|1|1A|U|857
4Y4O|1|1A|U|858
4Y4O|1|1A|C|859
*
4Y4O|1|1A|G|1240
4Y4O|1|1A|C|1241
*
4Y4O|1|1A|G|1296
4Y4O|1|1A|C|1297
4Y4O|1|1A|G|1298
4Y4O|1|1A|A|1299
4Y4O|1|1A|A|1300
4Y4O|1|1A|U|1301
4Y4O|1|1A|G|1302
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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