J5_4Y4O_012

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAG*CGUGC*GAG*CA*UG

Length

15 nucleotides

Bulged bases

4Y4O|1|2A|A|532, 4Y4O|1|2A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.2

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2A|C|531
4Y4O|1|2A|A|532
4Y4O|1|2A|G|533
*
4Y4O|1|2A|C|560
4Y4O|1|2A|G|561
4Y4O|1|2A|U|562
4Y4O|1|2A|G|563
4Y4O|1|2A|C|564
*
4Y4O|1|2A|G|577
4Y4O|1|2A|A|578
4Y4O|1|2A|G|579
*
4Y4O|1|2A|C|1261
4Y4O|1|2A|A|1262
*
4Y4O|1|2A|U|2017
4Y4O|1|2A|G|2018

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2V

50S ribosomal protein L21

Chain 2W

50S ribosomal protein L22