Motif J5_43153.2 Version J5_43153.2 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2	break		3		4		5		6	break		7		8		9	break		10		11	break		12		13	1-13	2-3	5-8	6-7	9-10	11-12
1	J5_4V9F_002	4V9F	0.2486	2	0	LSU rRNA	G	537	G	539	*	C	617	G	618	A	620	C	621	*	G	634	A	635	G	636	*	C	1365	C	1366	*	G	2058	U	2059	cWW	cWW	cWw	cWW	cWW	cWW
2	J5_4WF9_003	4WF9	0.1038	2	X	LSU rRNA	U	576	G	578	*	C	603	G	604	G	606	C	607	*	G	620	A	621	A	622	*	U	1299	G	1300	*	C	2044	A	2045	cWW	cWW	cWW	cWW	cWW	cWW
3	J5_5J7L_014	5J7L	0.0915	2	DA	LSU rRNA	C	531	G	533	*	C	560	G	561	A	563	C	564	*	G	577	G	578	G	579	*	C	1261	A	1262	*	U	2017	G	2018	cWW	cWW	cWW	cWW	cWW	cWW
4	J5_4Y4O_012	4Y4O	0.0000	2	2A	LSU rRNA	C	531	G	533	*	C	560	G	561	G	563	C	564	*	G	577	A	578	G	579	*	C	1261	A	1262	*	U	2017	G	2018	cWW	cWW	cWW	cWW	cWW	cWW
5	J5_7A0S_003	7A0S	0.0790	2	X	LSU rRNA	C	541	G	543	*	C	569	G	570	G	572	C	573	*	G	586	A	587	G	588	*	C	1274	A	1275	*	U	2000	G	2001	cWW	cWW	cWW	cWW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAGCGUGCGAGCAUG	2
GCGCGUACGAGCCGU	1
UAGCGUGCGAAUGCA	1
CAGCGUACGGGCAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUGA**	3
CGUAA**	1
AGUAG**	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (5)
Basepair signature: cWW-cWW-cWW-F-cWW-cWW-cWW
Heat map statistics: Min 0.07 | Avg 0.13 | Max 0.27

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Coloring options: Nucleotide numbers

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